QTL Accession ID | CQN7 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GS1CN |
Trait Name | glutamine synthetase content |
Published Symbol | |
Trait Synonym(s) | glutamine synthetase-1 content |
Trait Category | Biochemical |
Chromosome | 2 |
Comments | Nearest marker loci is R1826 on JRGP map. Positive allele effect contributed by Nipponbare. For assaying of Glutamine synthetase (GS1, EC:6.3.1.2) amount, the blade of leaf 9 was harvested after the emergence of leaf 11 from the sheath of leaf 10. The amounts were determined by densitometry of the western blots. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 23,986,676-27,038,920 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 95.2-95.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQN7 | 2 | 95.2 | 95.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1826 | RFLP | Oryza sativa | qtl_marker |
To | S14078 | RFLP | Oryza sativa | qtl_marker |
To | S13240 | RFLP | Oryza sativa | qtl_marker |
To | S1785 | RFLP | Oryza sativa | qtl_marker |
To | V195 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000305) | Obara-M et al., 2001 (IAGP) Yamaya-T et al., 2002 (IAGP) |
Plant Structure | (PO:0020039) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007116) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 23,986,676 | 27,038,920 | ~160K SNPs x 20 accessions (McNally 2... | 1,932 | Search for SNPs |
chr2 | 23,986,676 | 27,038,920 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
chr2 | 23,986,676 | 27,038,920 | Huang X, et al, Nat Genetics 2010 Nov... | 9,911 | Search for SNPs |
chr2 | 23,986,676 | 27,038,920 | RiceDiversity 44K SNP assay, 34 trait... | 9,911 | Search for SNPs |
chr2 | 23,986,676 | 27,038,920 | RiceDiversity 44K SNP assay, 34 trait... | 493 | Search for SNPs |