QTL Accession ID | CQN46 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PNWT |
Trait Name | panicle weight |
Published Symbol | |
Trait Synonym(s) | spike weight |
Trait Category | Yield |
Chromosome | 2 |
Comments | The trait was assayed for weight of the panicle present on the primary culm (main stem). For the assay, panicle from the primary culm was harvested 50 days after flowering and dried in a well-ventilated room for 2 weeks. Single marker regressions were used to detect the association between markers and each trait using qGENE software. Significant differences (P<0.05) in marker class means were interpreted as likely linkage of each trait to the marker locus. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 18,225,635-27,038,920 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 59.2-95.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQN46 | 2 | 59.2 | 95.2 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000014) | Obara-M et al., 2001 (IAGP) Yamaya-T et al., 2002 (IAGP) |
Plant Structure | (PO:0009049) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007116) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 18,225,635 | 27,038,920 | ~160K SNPs x 20 accessions (McNally 2... | 4,544 | Search for SNPs |
chr2 | 18,225,635 | 27,038,920 | '1536 chip' - 1311 SNPs x 395 rice ac... | 41 | Search for SNPs |
chr2 | 18,225,635 | 27,038,920 | Huang X, et al, Nat Genetics 2010 Nov... | 25,835 | Search for SNPs |
chr2 | 18,225,635 | 27,038,920 | RiceDiversity 44K SNP assay, 34 trait... | 25,835 | Search for SNPs |
chr2 | 18,225,635 | 27,038,920 | RiceDiversity 44K SNP assay, 34 trait... | 1,103 | Search for SNPs |