QTL Accession ID | CQN24 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GS1CN |
Trait Name | glutamine synthetase content |
Published Symbol | |
Trait Synonym(s) | glutamine synthetase-1 content |
Trait Category | Biochemical |
Chromosome | 11 |
Comments | Nearest marker loci is S2260 as reported by the authors. However, the marker S2260 (GenBank accession AU181129), has a 99% sequence similarity with another marker S16073 on JRGP map. Therefore, Gramene suggests S16073 should be considered as the nearest marker loci for this QTL. Positive allele effect contributed by Kasalath. For assaying Glutamine synthetase (GS1, EC:6.3.1.2) amount, the blade of leaf 9 was harvested after the emergence of leaf 11 from the sheath of leaf 10. The amounts were determined by densitometry of the western blots. Single marker regressions were used to detect the association between markers and each trait using qGENE software. Significant differences (P<0.05) in marker class means were interpreted as likely linkage of each trait to the marker locus. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 17,353,847-26,041,524 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 11 | 68.4-110.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQN24 | 11 | 68.4 | 110.1 |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000305) | Obara-M et al., 2001 (IAGP) Yamaya-T et al., 2002 (IAGP) |
Plant Structure | (PO:0020039) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007116) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Obara-M et al., 2001 (SM) Yamaya-T et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 17,353,847 | 26,041,524 | ~160K SNPs x 20 accessions (McNally 2... | 4,162 | Search for SNPs |
chr11 | 17,353,847 | 26,041,524 | '1536 chip' - 1311 SNPs x 395 rice ac... | 53 | Search for SNPs |
chr11 | 17,353,847 | 26,041,524 | Huang X, et al, Nat Genetics 2010 Nov... | 29,245 | Search for SNPs |
chr11 | 17,353,847 | 26,041,524 | RiceDiversity 44K SNP assay, 34 trait... | 29,245 | Search for SNPs |
chr11 | 17,353,847 | 26,041,524 | RiceDiversity 44K SNP assay, 34 trait... | 1,485 | Search for SNPs |