QTL Accession ID | CQAL26 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | GRWD | ||||
Trait Name | grain width | ||||
Published Symbol | |||||
Trait Synonym(s) |
|
||||
Trait Category | Quality | ||||
Chromosome | 1 | ||||
Comments | QTL detected for grain quality trait of paddy rice grains (grains with hull or intact seed). Population used was F2:3. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 198,822-1,891,260 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Zh97/Ming63 CNHZAU F2 QTL 1999 | BNL6.32 | 1 | 170.7-184.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAL26 | 1 | 170.7 | 184.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C161 | RFLP | Oryza sativa | qtl_marker |
To | R753 | RFLP | Oryza sativa | qtl_marker |
To | RM1 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000402) | Tan-Y-F et al., 2000 (IAGP) |
Plant Structure | (PO:0009001) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Y-F et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 198,822 | 1,891,260 | ~160K SNPs x 20 accessions (McNally 2... | 1,412 | Search for SNPs |
chr1 | 198,822 | 1,891,260 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr1 | 198,822 | 1,891,260 | Huang X, et al, Nat Genetics 2010 Nov... | 4,361 | Search for SNPs |
chr1 | 198,822 | 1,891,260 | RiceDiversity 44K SNP assay, 34 trait... | 4,361 | Search for SNPs |
chr1 | 198,822 | 1,891,260 | RiceDiversity 44K SNP assay, 34 trait... | 258 | Search for SNPs |