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Oryza sativa QTL "CQAL11" (chalkiness of endosperm)
| QTL Accession ID | CQAL11 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ENDFLR |
| Trait Name | chalkiness of endosperm |
| Published Symbol | |
| Trait Synonym(s) |
chalky endosperm floury endosperm |
| Trait Category | Quality |
| Chromosome | 10 |
| Comments | QTL detected for grain quality trait of brown rice grains (dehulled grains). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 21,812,894-22,926,437 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Zh97/Ming63 CNHZAU F2 QTL 1999 | BNL6.32 | 10 | 91.6-101.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAL11 | 10 | 91.6 | 101.5 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C223 | RFLP | Oryza sativa | qtl_marker |
| To | C371 | RFLP | Oryza sativa | qtl_marker |
| To | R2625 | RFLP | Oryza sativa | qtl_marker |
| To | G4003 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000104) | Tan-Y-F et al., 2000 (IAGP) |
| Plant Structure | (PO:0009089) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007633) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tan-Y-F et al., 2000 (SM) |
Database Cross-References (1)
SNPs (5,502)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 21,812,894 | 22,926,437 | ~160K SNPs x 20 accessions (McNally 2... | 375 | Search for SNPs |
| chr10 | 21,812,894 | 22,926,437 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr10 | 21,812,894 | 22,926,437 | Huang X, et al, Nat Genetics 2010 Nov... | 2,515 | Search for SNPs |
| chr10 | 21,812,894 | 22,926,437 | RiceDiversity 44K SNP assay, 34 trait... | 2,515 | Search for SNPs |
| chr10 | 21,812,894 | 22,926,437 | RiceDiversity 44K SNP assay, 34 trait... | 92 | Search for SNPs |
