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Oryza sativa QTL "CQAK6" (days to heading)
| QTL Accession ID | CQAK6 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | Hd3 | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 6 | ||||
| Comments | Detected in a cross between NIL(Hd2)/NIL(Hd3) by the method of invetrval mapping and one-way ANOVA. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,765,189-2,771,568 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 11.5-11.5 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAK6 | 6 | 11.5 | 11.5 |
Associated Markers (19)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | ABC158 | RFLP | Hordeum vulgare | qtl_marker |
| To | C12405S | RFLP | Oryza sativa | qtl_marker |
| To | C1368 | RFLP | Oryza sativa | qtl_marker |
| To | C1372S | RFLP | Oryza sativa | qtl_marker |
| To | C3010S | RFLP | Oryza sativa | qtl_marker |
| To | C425 | RFLP | Oryza sativa | qtl_marker |
| To | C764 | RFLP | Oryza sativa | qtl_marker |
| To | E1178S | RFLP | Oryza sativa | qtl_marker |
| To | R2749 | RFLP | Oryza sativa | qtl_marker |
| To | R2750 | RFLP | Oryza sativa | qtl_marker |
| To | R2291 | RFLP | Oryza sativa | qtl_marker |
| To | S10283 | RFLP | Oryza sativa | qtl_marker |
| To | RZ516 | RFLP | Oryza sativa | qtl_marker |
| To | R2967 | RFLP | Oryza sativa | qtl_marker |
| To | R1962 | RFLP | Oryza sativa | qtl_marker |
| To | E40848S | RFLP | Oryza sativa | qtl_marker |
| To | S21003S | RFLP | Oryza sativa | qtl_marker |
| To | RZ783 | RFLP | Oryza sativa | qtl_marker |
| To | E10921 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Lin-H-X. et al., 2000 (IAGP) |
| Plant Structure | (PO:0009049) | Lin-H-X. et al., 2000 (SM) |
| Plant Growth and Development Stage | (PO:0007130) | Lin-H-X. et al., 2000 (SM) |
| Growth Stage | (GRO:0007044) | Lin-H-X. et al., 2000 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lin-H-X. et al., 2000 (SM) |
Database Cross-References (1)
SNPs (42)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 2,765,189 | 2,771,568 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr6 | 2,765,189 | 2,771,568 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr6 | 2,765,189 | 2,771,568 | Huang X, et al, Nat Genetics 2010 Nov... | 21 | Search for SNPs |
| chr6 | 2,765,189 | 2,771,568 | RiceDiversity 44K SNP assay, 34 trait... | 21 | Search for SNPs |
| chr6 | 2,765,189 | 2,771,568 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
