QTL Accession ID | CQAK1 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | Hd1 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 6 | ||||
Comments | Detected in a cross between NIL(Hd1)/NIL(Hd2) by the method of invetrval mapping and one-way ANOVA. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 9,282,505-9,327,178 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 54.1-54.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQAK1 | 6 | 54.1 | 54.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C235 | RFLP | Oryza sativa | qtl_marker |
To | SE1 | Gene | Oryza sativa | ISS |
To | S2539 | RFLP | Oryza sativa | qtl_marker |
To | Y4836L | RFLP | Oryza sativa | qtl_marker |
To | Y2668L | RFLP | Oryza sativa | qtl_marker |
To | NH84 | RFLP | Oryza sativa | qtl_marker |
To | Y2145L | RFLP | Oryza sativa | qtl_marker |
To | Y4836R | RFLP | Oryza sativa | qtl_marker |
Species | Accession | Name | Evidence |
---|---|---|---|
Oryza sativa | GR:0060860 | PHOTOSENSITIVITY 1 | Lin-H-X. et al., 2000 (IAGP) |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Lin-H-X. et al., 2000 (IAGP) |
Plant Structure | (PO:0009049) | Lin-H-X. et al., 2000 (SM) |
Plant Growth and Development Stage | (PO:0007130) | Lin-H-X. et al., 2000 (SM) |
Growth Stage | (GRO:0007044) | Lin-H-X. et al., 2000 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lin-H-X. et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 9,282,505 | 9,327,178 | ~160K SNPs x 20 accessions (McNally 2... | 34 | Search for SNPs |
chr6 | 9,282,505 | 9,327,178 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 9,282,505 | 9,327,178 | Huang X, et al, Nat Genetics 2010 Nov... | 78 | Search for SNPs |
chr6 | 9,282,505 | 9,327,178 | RiceDiversity 44K SNP assay, 34 trait... | 78 | Search for SNPs |
chr6 | 9,282,505 | 9,327,178 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |