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Oryza sativa QTL "CQAA12" (leaf necrosis tolerance)
| QTL Accession ID | CQAA12 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | LFNECTL |
| Trait Name | leaf necrosis tolerance |
| Published Symbol | qCTS8-2b |
| Trait Synonym(s) | |
| Trait Category | Abiotic stress |
| Chromosome | 8 |
| Comments | 60 days old plants treated at 12C constant temperature both during the day and night for 5 days. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 20,650,060-21,142,502 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | M202/IR50 UCD QTL 2003 | BNL6.32 | 8 | 0.1-1.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| CQAA12 | 8 | 0.1 | 1.5 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM223 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM284 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM350 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM230 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0002663) | Ming-F et al., 2001 (IAGP) Andaya-V-C et al., 2003 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Ming-F et al., 2001 (SM) Andaya-V-C et al., 2003 (SM) |
Database Cross-References (2)
SNPs (2,591)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr8 | 20,650,060 | 21,142,502 | ~160K SNPs x 20 accessions (McNally 2... | 203 | Search for SNPs |
| chr8 | 20,650,060 | 21,142,502 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr8 | 20,650,060 | 21,142,502 | Huang X, et al, Nat Genetics 2010 Nov... | 1,160 | Search for SNPs |
| chr8 | 20,650,060 | 21,142,502 | RiceDiversity 44K SNP assay, 34 trait... | 1,160 | Search for SNPs |
| chr8 | 20,650,060 | 21,142,502 | RiceDiversity 44K SNP assay, 34 trait... | 66 | Search for SNPs |
