QTL Accession ID | AQN006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDLNG |
Trait Name | seed longevity |
Published Symbol | qLG-2 |
Trait Synonym(s) | |
Trait Category | Vigor |
Chromosome | 2 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 35,367,690-35,368,311 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 2 | 157.9-157.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQN006 | 2 | 157.9 | 157.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1470 | RFLP | Oryza sativa | qtl_marker |
To | G7016 | RFLP | Oryza sativa | qtl_marker |
To | G7019 | RFLP | Oryza sativa | qtl_marker |
To | C1901 | RFLP | Oryza sativa | qtl_marker |
To | R2702 | RFLP | Oryza sativa | qtl_marker |
To | RZ213 | RFLP | Oryza sativa | qtl_marker |
To | R1496 | RFLP | Oryza sativa | qtl_marker |
To | C2782 | RFLP | Oryza sativa | qtl_marker |
To | V258 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000435) | Miura-K et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Miura-K et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007038) | Miura-K et al., 2002 (SM) |
Growth Stage | (GRO:0007045) | Miura-K et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Miura-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 35,367,690 | 35,368,311 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr2 | 35,367,690 | 35,368,311 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 35,367,690 | 35,368,311 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr2 | 35,367,690 | 35,368,311 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr2 | 35,367,690 | 35,368,311 | RiceDiversity 44K SNP assay, 34 trait... | 0 |