QTL Accession ID | AQN005 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | qSD-11 |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 11 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 21,342,178-21,455,327 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 11 | 85.7-85.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQN005 | 11 | 85.7 | 85.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | S723 | RFLP | Oryza sativa | qtl_marker |
To | C189 | RFLP | Oryza sativa | qtl_marker |
To | C1003 | RFLP | Oryza sativa | qtl_marker |
To | RZ537 | RFLP | Oryza sativa | qtl_marker |
To | V191 | RFLP | Oryza sativa | qtl_marker |
To | C10775S | RFLP | Oryza sativa | qtl_marker |
To | E61360S | RFLP | Oryza sativa | qtl_marker |
To | E1981S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Miura-K et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Miura-K et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007132) | Miura-K et al., 2002 (SM) |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Miura-K et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Miura-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 21,342,178 | 21,455,327 | ~160K SNPs x 20 accessions (McNally 2... | 39 | Search for SNPs |
chr11 | 21,342,178 | 21,455,327 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr11 | 21,342,178 | 21,455,327 | Huang X, et al, Nat Genetics 2010 Nov... | 261 | Search for SNPs |
chr11 | 21,342,178 | 21,455,327 | RiceDiversity 44K SNP assay, 34 trait... | 261 | Search for SNPs |
chr11 | 21,342,178 | 21,455,327 | RiceDiversity 44K SNP assay, 34 trait... | 13 | Search for SNPs |