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Oryza sativa QTL "AQN003" (seed dormancy)
| QTL Accession ID | AQN003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | SDDOR |
| Trait Name | seed dormancy |
| Published Symbol | qSD-5 |
| Trait Synonym(s) |
SDDOR dormancy |
| Trait Category | Vigor |
| Chromosome | 5 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 3,306,310-3,344,572 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 5 | 27.7-27.7 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQN003 | 5 | 27.7 | 27.7 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R2752 | RFLP | Oryza sativa | qtl_marker |
| To | R1838 | RFLP | Oryza sativa | qtl_marker |
| To | C119 | RFLP | Oryza sativa | qtl_marker |
| To | CDO82 | RFLP | Avena sativa | qtl_marker |
| To | E30256S | RFLP | Oryza sativa | qtl_marker |
| To | S12447 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000253) | Miura-K et al., 2002 (IAGP) |
| Plant Structure | (PO:0009010) | Miura-K et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007132) | Miura-K et al., 2002 (SM) |
| (PO:0007038) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007045) | Miura-K et al., 2002 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Miura-K et al., 2002 (SM) |
Database Cross-References (1)
SNPs (236)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr5 | 3,306,310 | 3,344,572 | ~160K SNPs x 20 accessions (McNally 2... | 77 | Search for SNPs |
| chr5 | 3,306,310 | 3,344,572 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr5 | 3,306,310 | 3,344,572 | Huang X, et al, Nat Genetics 2010 Nov... | 74 | Search for SNPs |
| chr5 | 3,306,310 | 3,344,572 | RiceDiversity 44K SNP assay, 34 trait... | 74 | Search for SNPs |
| chr5 | 3,306,310 | 3,344,572 | RiceDiversity 44K SNP assay, 34 trait... | 10 | Search for SNPs |
