QTL Accession ID | AQN001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SDDOR |
Trait Name | seed dormancy |
Published Symbol | qSD-1 |
Trait Synonym(s) |
SDDOR dormancy |
Trait Category | Vigor |
Chromosome | 1 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 3,445,940-3,447,601 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 1 | 16.1-16.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQN001 | 1 | 16.1 | 16.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R1613 | RFLP | Oryza sativa | qtl_marker |
To | G5001 | RFLP | Oryza sativa | qtl_marker |
To | C804 | RFLP | Oryza sativa | qtl_marker |
To | E4105S | RFLP | Oryza sativa | qtl_marker |
To | Y1941R | RFLP | Oryza sativa | qtl_marker |
To | E222S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000253) | Miura-K et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Miura-K et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007132) | Miura-K et al., 2002 (SM) |
(PO:0007038) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007045) | Miura-K et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Miura-K et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 3,445,940 | 3,447,601 | ~160K SNPs x 20 accessions (McNally 2... | 3 | Search for SNPs |
chr1 | 3,445,940 | 3,447,601 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 3,445,940 | 3,447,601 | Huang X, et al, Nat Genetics 2010 Nov... | 11 | Search for SNPs |
chr1 | 3,445,940 | 3,447,601 | RiceDiversity 44K SNP assay, 34 trait... | 11 | Search for SNPs |
chr1 | 3,445,940 | 3,447,601 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |