QTL Accession ID | AQFX002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | Hd3b | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 6 | ||||
Comments | The inheritance mode of this gene is additive. The Kasalath allele at the locus causes late heading under long-day and natural field conditions. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,260,721-2,285,611 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 10.4-10.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFX002 | 6 | 10.4 | 10.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | Fl32b | Gene | Oryza sativa | ISS |
To | V168 | RFLP | Oryza sativa | qtl_marker |
To | G8008 | RFLP | Oryza sativa | qtl_marker |
To | R1952 | RFLP | Oryza sativa | qtl_marker |
To | Y3637R | RFLP | Oryza sativa | qtl_marker |
To | C688 | RFLP | Oryza sativa | qtl_marker |
To | R2749 | RFLP | Oryza sativa | qtl_marker |
To | R2750 | RFLP | Oryza sativa | qtl_marker |
To | C1372S | RFLP | Oryza sativa | qtl_marker |
To | R2291 | RFLP | Oryza sativa | qtl_marker |
To | S10283 | RFLP | Oryza sativa | qtl_marker |
To | RZ516 | RFLP | Oryza sativa | qtl_marker |
To | R2967 | RFLP | Oryza sativa | qtl_marker |
To | R1962 | RFLP | Oryza sativa | qtl_marker |
To | C1368 | RFLP | Oryza sativa | qtl_marker |
To | C12405S | RFLP | Oryza sativa | qtl_marker |
To | E40848S | RFLP | Oryza sativa | qtl_marker |
To | S21003S | RFLP | Oryza sativa | qtl_marker |
To | RZ783 | RFLP | Oryza sativa | qtl_marker |
Species | Accession | Name | Evidence |
---|---|---|---|
Oryza sativa | GR:0061165 | Flowering date-32b | Monna-L et al., 2002 (IAGP) |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Monna-L et al., 2002 (IAGP) |
Plant Structure | (PO:0009049) | Monna-L et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Monna-L et al., 2002 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Monna-L et al., 2002 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Monna-L et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 2,260,721 | 2,285,611 | ~160K SNPs x 20 accessions (McNally 2... | 29 | Search for SNPs |
chr6 | 2,260,721 | 2,285,611 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 2,260,721 | 2,285,611 | Huang X, et al, Nat Genetics 2010 Nov... | 82 | Search for SNPs |
chr6 | 2,260,721 | 2,285,611 | RiceDiversity 44K SNP assay, 34 trait... | 82 | Search for SNPs |
chr6 | 2,260,721 | 2,285,611 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |