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Oryza sativa QTL "AQFX001" (days to heading)
| QTL Accession ID | AQFX001 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | Hd3a | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 6 | ||||
| Comments | The inheritance mode of this gene is additive. The Kasalath allele at the locus promotes heading under short-day conditions. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 1,644,474-3,082,287 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 6 | 12.3-12.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFX001 | 6 | 12.3 | 12.3 |
Associated Markers (8)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | ABC158 | RFLP | Hordeum vulgare | qtl_marker |
| To | HD3A | Gene | Oryza sativa | ISS |
| To | C425 | RFLP | Oryza sativa | qtl_marker |
| To | E10921 | RFLP | Oryza sativa | qtl_marker |
| To | C764 | RFLP | Oryza sativa | qtl_marker |
| To | C3010S | RFLP | Oryza sativa | qtl_marker |
| To | E1178S | RFLP | Oryza sativa | qtl_marker |
| To | Y4404L | RFLP | Oryza sativa | qtl_marker |
Associated Genes (1)
| Species | Accession | Name | Evidence |
|---|---|---|---|
| Oryza sativa | GR:0060442 | HEADING DATE 3A | Monna-L et al., 2002 (IAGP) |
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Monna-L et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Monna-L et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Monna-L et al., 2002 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Monna-L et al., 2002 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Monna-L et al., 2002 (SM) |
Database Cross-References (1)
SNPs (7,409)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 1,644,474 | 3,082,287 | ~160K SNPs x 20 accessions (McNally 2... | 1,230 | Search for SNPs |
| chr6 | 1,644,474 | 3,082,287 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
| chr6 | 1,644,474 | 3,082,287 | Huang X, et al, Nat Genetics 2010 Nov... | 2,977 | Search for SNPs |
| chr6 | 1,644,474 | 3,082,287 | RiceDiversity 44K SNP assay, 34 trait... | 2,977 | Search for SNPs |
| chr6 | 1,644,474 | 3,082,287 | RiceDiversity 44K SNP assay, 34 trait... | 214 | Search for SNPs |
