QTL Accession ID | AQFE114 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | TIAG |
Trait Name | tiller angle |
Published Symbol | tt2.1 |
Trait Synonym(s) |
plant habit tiller type |
Trait Category | Anatomy |
Chromosome | 2 |
Comments | This QTL was detected based on phenotypic data from the greenhouse experiment conducted in Beaumont, Texas, 1998. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 29,631,532-32,774,553 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 2 | 125.8-141.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFE114 | 2 | 125.8 | 141.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM318 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM240 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM250 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM221 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM266 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000567) | Thomson-M-J et al., 2003 (IAGP) |
Plant Structure | (PO:0005001) | Thomson-M-J et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007073) | Thomson-M-J et al., 2003 (SM) |
Growth Stage | (GRO:0007049) | Thomson-M-J et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Thomson-M-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 29,631,532 | 32,774,553 | ~160K SNPs x 20 accessions (McNally 2... | 1,530 | Search for SNPs |
chr2 | 29,631,532 | 32,774,553 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr2 | 29,631,532 | 32,774,553 | Huang X, et al, Nat Genetics 2010 Nov... | 7,198 | Search for SNPs |
chr2 | 29,631,532 | 32,774,553 | RiceDiversity 44K SNP assay, 34 trait... | 7,198 | Search for SNPs |
chr2 | 29,631,532 | 32,774,553 | RiceDiversity 44K SNP assay, 34 trait... | 355 | Search for SNPs |