QTL Accession ID | AQFE106 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GRSH |
Trait Name | grain shattering |
Published Symbol | sh4.1 |
Trait Synonym(s) | seed shattering |
Trait Category | Anatomy |
Chromosome | 4 |
Comments | This QTL was detected based on phenotypic data from the greenhouse experiment conducted in Beaumont, Texas, 1998. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 14,706,596-18,579,957 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 4 | 12.2-14.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFE106 | 4 | 12.2 | 14.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ656 | RFLP | Oryza sativa | qtl_marker |
To | RM185 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM261 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM119 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000473) | Thomson-M-J et al., 2003 (IAGP) |
Plant Structure | (PO:0009001) | Thomson-M-J et al., 2003 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Thomson-M-J et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Thomson-M-J et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Thomson-M-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 14,706,596 | 18,579,957 | ~160K SNPs x 20 accessions (McNally 2... | 1,089 | Search for SNPs |
chr4 | 14,706,596 | 18,579,957 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr4 | 14,706,596 | 18,579,957 | Huang X, et al, Nat Genetics 2010 Nov... | 10,230 | Search for SNPs |
chr4 | 14,706,596 | 18,579,957 | RiceDiversity 44K SNP assay, 34 trait... | 10,230 | Search for SNPs |
chr4 | 14,706,596 | 18,579,957 | RiceDiversity 44K SNP assay, 34 trait... | 213 | Search for SNPs |