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Oryza sativa QTL "AQFE038" (spikelet number)
| QTL Accession ID | AQFE038 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||||||
| Trait Symbol | SPKNB | ||||||||||||||||
| Trait Name | spikelet number | ||||||||||||||||
| Published Symbol | spp1.1 | ||||||||||||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||||||||||||
| Chromosome | 1 | ||||||||||||||||
| Comments | This QTL was detected based on phenotypic data from the field experiment (drilled) conducted in Alvin, Texas, 1998. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,885,844-7,445,919 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 1 | 19.8-41.1 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFE038 | 1 | 19.8 | 41.1 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM283 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM272 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG532 | RFLP | Oryza sativa | qtl_marker |
| To | RM490 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM259 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM220 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM243 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000456) | Thomson-M-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0009051) | Thomson-M-J et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Thomson-M-J et al., 2003 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Thomson-M-J et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Thomson-M-J et al., 2003 (SM) |
Database Cross-References (2)
SNPs (18,640)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 4,885,844 | 7,445,919 | ~160K SNPs x 20 accessions (McNally 2... | 1,841 | Search for SNPs |
| chr1 | 4,885,844 | 7,445,919 | '1536 chip' - 1311 SNPs x 395 rice ac... | 16 | Search for SNPs |
| chr1 | 4,885,844 | 7,445,919 | Huang X, et al, Nat Genetics 2010 Nov... | 8,017 | Search for SNPs |
| chr1 | 4,885,844 | 7,445,919 | RiceDiversity 44K SNP assay, 34 trait... | 8,017 | Search for SNPs |
| chr1 | 4,885,844 | 7,445,919 | RiceDiversity 44K SNP assay, 34 trait... | 749 | Search for SNPs |
