QTL Accession ID | AQFE015 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | dth4.2 | ||||
Trait Synonym(s) |
|
||||
Trait Category | Development | ||||
Chromosome | 4 | ||||
Comments | This QTL was detected based on phenotypic data from the field experiment conducted in Beaumont, Texas, 1998. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 24,732,111-28,575,029 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 4 | 38.7-44.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFE015 | 4 | 38.7 | 44.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ740 | RFLP | Oryza sativa | qtl_marker |
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM303 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM119 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ590 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Thomson-M-J et al., 2003 (IAGP) |
Plant Structure | (PO:0009049) | Thomson-M-J et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Thomson-M-J et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Thomson-M-J et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Thomson-M-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 24,732,111 | 28,575,029 | ~160K SNPs x 20 accessions (McNally 2... | 1,168 | Search for SNPs |
chr4 | 24,732,111 | 28,575,029 | '1536 chip' - 1311 SNPs x 395 rice ac... | 6 | Search for SNPs |
chr4 | 24,732,111 | 28,575,029 | Huang X, et al, Nat Genetics 2010 Nov... | 5,776 | Search for SNPs |
chr4 | 24,732,111 | 28,575,029 | RiceDiversity 44K SNP assay, 34 trait... | 5,776 | Search for SNPs |
chr4 | 24,732,111 | 28,575,029 | RiceDiversity 44K SNP assay, 34 trait... | 251 | Search for SNPs |