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Oryza sativa QTL "AQFE005" (days to heading)
| QTL Accession ID | AQFE005 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | dth1.2 | ||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 1 | ||||
| Comments | This QTL was detected based on phenotypic data from the field experiment (transplanted) conducted in Alvin, Texas, 1998. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,937,981-40,567,354 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 1 | 136.6-157.1 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFE005 | 1 | 136.6 | 157.1 |
Associated Markers (7)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ730 | RFLP | Oryza sativa | qtl_marker |
| To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM104 | SSR | Oryza sativa | qtl_marker |
| To | RZ801 | RFLP | Oryza sativa | qtl_marker |
| To | RM212 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG331 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Thomson-M-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0009049) | Thomson-M-J et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007041) | Thomson-M-J et al., 2003 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007044) | Thomson-M-J et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Thomson-M-J et al., 2003 (SM) |
Database Cross-References (2)
SNPs (20,842)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 34,937,981 | 40,567,354 | ~160K SNPs x 20 accessions (McNally 2... | 3,906 | Search for SNPs |
| chr1 | 34,937,981 | 40,567,354 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
| chr1 | 34,937,981 | 40,567,354 | Huang X, et al, Nat Genetics 2010 Nov... | 8,090 | Search for SNPs |
| chr1 | 34,937,981 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 8,090 | Search for SNPs |
| chr1 | 34,937,981 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 738 | Search for SNPs |
