QTL Accession ID | AQFE004 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | dth1.1 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 1 | ||||
Comments | This QTL was detected based on phenotypic data from the greenhouse experiment conducted in Beaumont, Texas, 1998. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 3,050,029-12,301,053 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 1 | 5.4-70.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFE004 | 1 | 5.4 | 70.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ288 | RFLP | Oryza sativa | qtl_marker |
To | RM220 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM283 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM272 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG532 | RFLP | Oryza sativa | qtl_marker |
To | RM490 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM259 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM243 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ382 | RFLP | Oryza sativa | qtl_marker |
To | RM23 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG811 | RFLP | Oryza sativa | qtl_marker |
To | RM140 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ543 | RFLP | Oryza sativa | qtl_marker |
To | RM5 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Thomson-M-J et al., 2003 (IAGP) |
Plant Structure | (PO:0009049) | Thomson-M-J et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Thomson-M-J et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007044) | Thomson-M-J et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Thomson-M-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 3,050,029 | 12,301,053 | ~160K SNPs x 20 accessions (McNally 2... | 5,915 | Search for SNPs |
chr1 | 3,050,029 | 12,301,053 | '1536 chip' - 1311 SNPs x 395 rice ac... | 35 | Search for SNPs |
chr1 | 3,050,029 | 12,301,053 | Huang X, et al, Nat Genetics 2010 Nov... | 18,100 | Search for SNPs |
chr1 | 3,050,029 | 12,301,053 | RiceDiversity 44K SNP assay, 34 trait... | 18,100 | Search for SNPs |
chr1 | 3,050,029 | 12,301,053 | RiceDiversity 44K SNP assay, 34 trait... | 1,553 | Search for SNPs |