QTL Accession ID | AQEJ085 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RTACT |
Trait Name | root activity |
Published Symbol | |
Trait Synonym(s) | root exudate |
Trait Category | Vigor |
Chromosome | 6 |
Comments | This locus was found to have significant interaction with another locus, AQEJ086. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 5,425,408-6,023,977 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 6 | 60-66.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEJ085 | 6 | 60 | 66.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG138 | RFLP | Oryza sativa | qtl_marker |
To | RM253 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ588 | RFLP | Oryza sativa | qtl_marker |
To | RZ667 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000434) | Yan-C-J et al., 2003 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 5,425,408 | 6,023,977 | ~160K SNPs x 20 accessions (McNally 2... | 293 | Search for SNPs |
chr6 | 5,425,408 | 6,023,977 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr6 | 5,425,408 | 6,023,977 | Huang X, et al, Nat Genetics 2010 Nov... | 1,522 | Search for SNPs |
chr6 | 5,425,408 | 6,023,977 | RiceDiversity 44K SNP assay, 34 trait... | 1,522 | Search for SNPs |
chr6 | 5,425,408 | 6,023,977 | RiceDiversity 44K SNP assay, 34 trait... | 58 | Search for SNPs |