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Oryza sativa QTL "AQEJ078" (root activity)
| QTL Accession ID | AQEJ078 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | RTACT |
| Trait Name | root activity |
| Published Symbol | |
| Trait Synonym(s) | root exudate |
| Trait Category | Vigor |
| Chromosome | 11 |
| Comments | This locus was found to have significant interaction with another locus, AQEJ077. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 28,409,788-28,412,347 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 11 | 100.2-102.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEJ078 | 11 | 100.2 | 102.6 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ536 | RFLP | Oryza sativa | qtl_marker |
| To | RM224 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | R2447 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000434) | Yan-C-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Database Cross-References (1)
SNPs (26)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 28,409,788 | 28,412,347 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr11 | 28,409,788 | 28,412,347 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr11 | 28,409,788 | 28,412,347 | Huang X, et al, Nat Genetics 2010 Nov... | 13 | Search for SNPs |
| chr11 | 28,409,788 | 28,412,347 | RiceDiversity 44K SNP assay, 34 trait... | 13 | Search for SNPs |
| chr11 | 28,409,788 | 28,412,347 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
