QTL Accession ID | AQEJ059 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFPM |
Trait Name | leaf perimeter |
Published Symbol | |
Trait Synonym(s) | leaf circumference |
Trait Category | Anatomy |
Chromosome | 3 |
Comments | Leaf perimeter of top third leaf was measured to evaluate leaf perimeter and used for QTL analysis. This locus was found to have significant interaction with another locus, AQEJ060. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 33,838,732-34,626,096 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 3 | 130.2-146.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEJ059 | 3 | 130.2 | 146.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM143 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | R1927 | RFLP | Oryza sativa | qtl_marker |
To | RZ142 | RFLP | Oryza sativa | qtl_marker |
To | RZ575 | RFLP | Oryza sativa | qtl_marker |
To | RZ613 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000616) | Yan-C-J et al., 2003 (IAGP) |
Plant Structure | (PO:0020128) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 33,838,732 | 34,626,096 | ~160K SNPs x 20 accessions (McNally 2... | 446 | Search for SNPs |
chr3 | 33,838,732 | 34,626,096 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr3 | 33,838,732 | 34,626,096 | Huang X, et al, Nat Genetics 2010 Nov... | 2,198 | Search for SNPs |
chr3 | 33,838,732 | 34,626,096 | RiceDiversity 44K SNP assay, 34 trait... | 2,198 | Search for SNPs |
chr3 | 33,838,732 | 34,626,096 | RiceDiversity 44K SNP assay, 34 trait... | 84 | Search for SNPs |