QTL Accession ID | AQEJ023 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFLGWDRO |
Trait Name | leaf length to width ratio |
Published Symbol | qFLWR-11 |
Trait Synonym(s) | Spikelet L/W ratio |
Trait Category | Anatomy |
Chromosome | 11 |
Comments | Leaf length to width ratio of top first leaf was measured to evaluate leaf length to width ratio and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 9,001,608-9,001,898 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 11 | 35.1-37.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEJ023 | 11 | 35.1 | 37.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM202 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG167 | RFLP | Oryza sativa | qtl_marker |
To | RG118 | RFLP | Oryza sativa | qtl_marker |
To | RM229 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000542) | Yan-C-J et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 9,001,608 | 9,001,898 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr11 | 9,001,608 | 9,001,898 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr11 | 9,001,608 | 9,001,898 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr11 | 9,001,608 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr11 | 9,001,608 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 0 |