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Oryza sativa QTL "AQEJ022" (leaf length)
| QTL Accession ID | AQEJ022 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | LFLG |
| Trait Name | leaf length |
| Published Symbol | qFLL-11 |
| Trait Synonym(s) |
FLL flag-leaf length |
| Trait Category | Anatomy |
| Chromosome | 11 |
| Comments | Leaf length of top first leaf was measured to evaluate leaf length and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 9,001,608-9,001,898 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 11 | 35.1-37.8 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEJ022 | 11 | 35.1 | 37.8 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM202 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG167 | RFLP | Oryza sativa | qtl_marker |
| To | RG118 | RFLP | Oryza sativa | qtl_marker |
| To | RM229 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000135) | Yan-C-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr11 | 9,001,608 | 9,001,898 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr11 | 9,001,608 | 9,001,898 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr11 | 9,001,608 | 9,001,898 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr11 | 9,001,608 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr11 | 9,001,608 | 9,001,898 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
