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Oryza sativa QTL "AQEJ003" (leaf perimeter)
| QTL Accession ID | AQEJ003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | LFPM |
| Trait Name | leaf perimeter |
| Published Symbol | qFLP-1 |
| Trait Synonym(s) | leaf circumference |
| Trait Category | Anatomy |
| Chromosome | 1 |
| Comments | Leaf perimeter of top first leaf was measured to evaluate leaf perimeter and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 4,635,793-5,558,814 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 1 | 23.1-38.5 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEJ003 | 1 | 23.1 | 38.5 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM1 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM151 | SSR | Oryza sativa | qtl_marker |
| To | RG532 | RFLP | Oryza sativa | qtl_marker |
| To | RG313 | RFLP | Oryza sativa | qtl_marker |
| To | RG811 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000616) | Yan-C-J et al., 2003 (IAGP) |
| Plant Structure | (PO:0020128) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Database Cross-References (1)
SNPs (4,670)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 4,635,793 | 5,558,814 | ~160K SNPs x 20 accessions (McNally 2... | 542 | Search for SNPs |
| chr1 | 4,635,793 | 5,558,814 | '1536 chip' - 1311 SNPs x 395 rice ac... | 5 | Search for SNPs |
| chr1 | 4,635,793 | 5,558,814 | Huang X, et al, Nat Genetics 2010 Nov... | 2,001 | Search for SNPs |
| chr1 | 4,635,793 | 5,558,814 | RiceDiversity 44K SNP assay, 34 trait... | 2,001 | Search for SNPs |
| chr1 | 4,635,793 | 5,558,814 | RiceDiversity 44K SNP assay, 34 trait... | 121 | Search for SNPs |
