QTL Accession ID | AQDR070 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GRYLDPPN |
Trait Name | grain yield per panicle |
Published Symbol | |
Trait Synonym(s) |
GWP grain weight per panicle |
Trait Category | Yield |
Chromosome | 1 |
Comments | This locus was found to have significant interaction with another locus, AQDR071. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 41,967,890-41,969,197 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TAMU Lem/Teq RI QTL 1995 | BNL6.32 | 1 | 28-28 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQDR070 | 1 | 28 | 28 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG381 | RFLP | Oryza sativa | qtl_marker |
To | RG236 | RFLP | Oryza sativa | qtl_marker |
To | CDO388 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000450) | Li-Z-K et al., 1997 (IAGP) |
Plant Structure | (PO:0009001) | Gramene curators, 2007 (IC) |
(PO:0009049) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-Z-K et al., 1997 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 41,967,890 | 41,969,197 | ~160K SNPs x 20 accessions (McNally 2... | 8 | Search for SNPs |
chr1 | 41,967,890 | 41,969,197 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 41,967,890 | 41,969,197 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr1 | 41,967,890 | 41,969,197 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr1 | 41,967,890 | 41,969,197 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |