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Oryza sativa QTL "AQDR008" (1000-seed weight)
| QTL Accession ID | AQDR008 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TSDWT | ||||||||||
| Trait Name | 1000-seed weight | ||||||||||
| Published Symbol | QKw10 | ||||||||||
| Trait Synonym(s) |
|
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| Trait Category | Yield | ||||||||||
| Chromosome | 10 | ||||||||||
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 17,794,267-19,823,295 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | TAMU Lem/Teq RI QTL 1995 | BNL6.32 | 10 | 19-54 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQDR008 | 10 | 19 | 54 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | CDO98 | RFLP | Avena sativa | qtl_marker |
| To | RG752 | RFLP | Oryza sativa | qtl_marker |
| To | RG241 | RFLP | Oryza sativa | qtl_marker |
| To | RZ786 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000382) | Li-Z-K et al., 1997 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-Z-K et al., 1997 (SM) |
Database Cross-References (1)
SNPs (6,536)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 17,794,267 | 19,823,295 | ~160K SNPs x 20 accessions (McNally 2... | 1,132 | Search for SNPs |
| chr10 | 17,794,267 | 19,823,295 | '1536 chip' - 1311 SNPs x 395 rice ac... | 12 | Search for SNPs |
| chr10 | 17,794,267 | 19,823,295 | Huang X, et al, Nat Genetics 2010 Nov... | 2,590 | Search for SNPs |
| chr10 | 17,794,267 | 19,823,295 | RiceDiversity 44K SNP assay, 34 trait... | 2,590 | Search for SNPs |
| chr10 | 17,794,267 | 19,823,295 | RiceDiversity 44K SNP assay, 34 trait... | 212 | Search for SNPs |
