QTL Accession ID | AQCV025 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ENDFLR |
Trait Name | chalkiness of endosperm |
Published Symbol | qPGWC-5 |
Trait Synonym(s) |
chalky endosperm floury endosperm |
Trait Category | Quality |
Chromosome | 5 |
Comments | This QTL was detected based on the phenotypic data of 2000. Percentage of grains with chalkiness (PGWC, the ratio of the number of chalky grains to the total number of observed grains) was measured to evaluate chalkiness of endosperm and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 1,115,821-1,861,699 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 5 | 12-19 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCV025 | 5 | 12 | 19 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R830 | RFLP | Oryza sativa | qtl_marker |
To | G396 | RFLP | Oryza sativa | qtl_marker |
To | S2136 | RFLP | Oryza sativa | qtl_marker |
To | F5002 | RFLP | Oryza sativa | qtl_marker |
To | E60162S | RFLP | Oryza sativa | qtl_marker |
To | C60626 | RFLP | Oryza sativa | qtl_marker |
To | E1455S | RFLP | Oryza sativa | qtl_marker |
To | C10916S | RFLP | Oryza sativa | qtl_marker |
To | R3166 | RFLP | Oryza sativa | qtl_marker |
To | E732S | RFLP | Oryza sativa | qtl_marker |
To | V82 | RFLP | Oryza sativa | qtl_marker |
To | S2208 | RFLP | Oryza sativa | qtl_marker |
To | S2309 | RFLP | Oryza sativa | qtl_marker |
To | R2213S | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000104) | Li-Z-F et al., 2003 (IAGP) |
Plant Structure | (PO:0009089) | Li-Z-F et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007633) | Li-Z-F et al., 2003 (SM) |
Growth Stage | (GRO:0007140) | Li-Z-F et al., 2003 (SM) |
(GRO:0007045) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-Z-F et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 1,115,821 | 1,861,699 | ~160K SNPs x 20 accessions (McNally 2... | 317 | Search for SNPs |
chr5 | 1,115,821 | 1,861,699 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr5 | 1,115,821 | 1,861,699 | Huang X, et al, Nat Genetics 2010 Nov... | 1,084 | Search for SNPs |
chr5 | 1,115,821 | 1,861,699 | RiceDiversity 44K SNP assay, 34 trait... | 1,084 | Search for SNPs |
chr5 | 1,115,821 | 1,861,699 | RiceDiversity 44K SNP assay, 34 trait... | 91 | Search for SNPs |