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Oryza sativa QTL "AQCV005" (grain length)
| QTL Accession ID | AQCV005 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | GRLG | ||||
| Trait Name | grain length | ||||
| Published Symbol | qGL-5 | ||||
| Trait Synonym(s) |
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| Trait Category | Quality | ||||
| Chromosome | 5 | ||||
| Comments | This QTL was detected based on the phenotypic data of 2000. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 18,252,951-18,993,336 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 5 | 70.5-74.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCV005 | 5 | 70.5 | 74.2 |
Associated Markers (14)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R1436 | RFLP | Oryza sativa | qtl_marker |
| To | G3010 | RFLP | Oryza sativa | qtl_marker |
| To | C1239 | RFLP | Oryza sativa | qtl_marker |
| To | PH18 | RFLP | Oryza sativa | qtl_marker |
| To | R188 | RFLP | Oryza sativa | qtl_marker |
| To | R2289 | RFLP | Oryza sativa | qtl_marker |
| To | C63974 | RFLP | Oryza sativa | qtl_marker |
| To | R372 | RFLP | Oryza sativa | qtl_marker |
| To | C10566S | RFLP | Oryza sativa | qtl_marker |
| To | E50919S | RFLP | Oryza sativa | qtl_marker |
| To | PSR170 | RFLP | Triticum aestivum | qtl_marker |
| To | S2692 | RFLP | Oryza sativa | qtl_marker |
| To | S811 | RFLP | Oryza sativa | qtl_marker |
| To | C2269S | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000734) | Li-Z-F et al., 2003 (IAGP) |
| Plant Structure | (PO:0009001) | Li-Z-F et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007038) | Li-Z-F et al., 2003 (SM) |
| Growth Stage | (GRO:0007045) | Li-Z-F et al., 2003 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Li-Z-F et al., 2003 (SM) |
Database Cross-References (1)
SNPs (4,577)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr5 | 18,252,951 | 18,993,336 | ~160K SNPs x 20 accessions (McNally 2... | 384 | Search for SNPs |
| chr5 | 18,252,951 | 18,993,336 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
| chr5 | 18,252,951 | 18,993,336 | Huang X, et al, Nat Genetics 2010 Nov... | 2,059 | Search for SNPs |
| chr5 | 18,252,951 | 18,993,336 | RiceDiversity 44K SNP assay, 34 trait... | 2,059 | Search for SNPs |
| chr5 | 18,252,951 | 18,993,336 | RiceDiversity 44K SNP assay, 34 trait... | 73 | Search for SNPs |
