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Oryza sativa QTL "AQCO128" (pollen fertility)
| QTL Accession ID | AQCO128 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PF |
| Trait Name | pollen fertility |
| Published Symbol | |
| Trait Synonym(s) | POFRT |
| Trait Category | Sterility or fertility |
| Chromosome | 3 |
| Comments | This QTL had significant interaction with the QTL, AQCO127, on pollen fertility under "PH-SD-LT" environment (Phytotron short day/low temperature, 10 h/28 degC). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 12,868,713-12,869,833 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Pei/8902 QTL 1999 | BNL6.32 | 3 | 109.6-109.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCO128 | 3 | 109.6 | 109.6 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C1135 | RFLP | Oryza sativa | qtl_marker |
| To | RZ531 | RFLP | Oryza sativa | qtl_marker |
| To | CDO38 | RFLP | Avena sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000421) | He-Y-Q et al., 1999 (IAGP) |
| Plant Structure | (PO:0020091) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | He-Y-Q et al., 1999 (SM) |
Database Cross-References (1)
SNPs (5)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 12,868,713 | 12,869,833 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr3 | 12,868,713 | 12,869,833 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 12,868,713 | 12,869,833 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr3 | 12,868,713 | 12,869,833 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr3 | 12,868,713 | 12,869,833 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
