QTL Accession ID | AQCO035 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PF |
Trait Name | pollen fertility |
Published Symbol | |
Trait Synonym(s) | POFRT |
Trait Category | Sterility or fertility |
Chromosome | 4 |
Comments | This QTL had significant interaction with the QTL, AQCO034, on pollen fertility under "PH-LD-LT" environment (Phytotron long day/low temperature, >14.5 h/24 degC). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 9,070,710-9,071,674 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Pei/8902 QTL 1999 | BNL6.32 | 4 | 74.8-74.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCO035 | 4 | 74.8 | 74.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ602 | RFLP | Oryza sativa | qtl_marker |
To | C975 | RFLP | Oryza sativa | qtl_marker |
To | C933 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000421) | He-Y-Q et al., 1999 (IAGP) |
Plant Structure | (PO:0020091) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007151) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | He-Y-Q et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 9,070,710 | 9,071,674 | ~160K SNPs x 20 accessions (McNally 2... | 4 | Search for SNPs |
chr4 | 9,070,710 | 9,071,674 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 9,070,710 | 9,071,674 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr4 | 9,070,710 | 9,071,674 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr4 | 9,070,710 | 9,071,674 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |