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Oryza sativa QTL "AQCO012" (spikelet fertility)
| QTL Accession ID | AQCO012 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | SPKFRT | ||||||
| Trait Name | spikelet fertility | ||||||
| Published Symbol | L6 | ||||||
| Trait Synonym(s) |
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| Trait Category | Sterility or fertility | ||||||
| Chromosome | 6 | ||||||
| Comments | Spikelet fertility under "Natural LD (YA96)" environment (Natural long day in Yuanan, 1996) was measured and used for QTL analysis. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 9,282,505-11,696,494 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Pei/8902 QTL 1999 | BNL6.32 | 6 | 29-39.2 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQCO012 | 6 | 29 | 39.2 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C235 | RFLP | Oryza sativa | qtl_marker |
| To | RZ612 | RFLP | Oryza sativa | qtl_marker |
| To | RG64 | RFLP | Oryza sativa | qtl_marker |
| To | G12 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000180) | He-Y-Q et al., 1999 (IAGP) |
| Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | He-Y-Q et al., 1999 (SM) |
Database Cross-References (1)
SNPs (14,808)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 9,282,505 | 11,696,494 | ~160K SNPs x 20 accessions (McNally 2... | 1,420 | Search for SNPs |
| chr6 | 9,282,505 | 11,696,494 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
| chr6 | 9,282,505 | 11,696,494 | Huang X, et al, Nat Genetics 2010 Nov... | 6,568 | Search for SNPs |
| chr6 | 9,282,505 | 11,696,494 | RiceDiversity 44K SNP assay, 34 trait... | 6,568 | Search for SNPs |
| chr6 | 9,282,505 | 11,696,494 | RiceDiversity 44K SNP assay, 34 trait... | 241 | Search for SNPs |
