QTL Accession ID | AQCO005 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | SPKFRT | ||||||
Trait Name | spikelet fertility | ||||||
Published Symbol | L3b | ||||||
Trait Synonym(s) |
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Trait Category | Sterility or fertility | ||||||
Chromosome | 3 | ||||||
Comments | Spikelet fertility under "PH-LD-LT" environment (Phytotron long day/low temperature, >14.5 h/24 degC) was measured and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 5,729,669-12,023,770 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Pei/8902 QTL 1999 | BNL6.32 | 3 | 116.2-136.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQCO005 | 3 | 116.2 | 136.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO38 | RFLP | Avena sativa | qtl_marker |
To | RG191 | RFLP | Oryza sativa | qtl_marker |
To | C1135 | RFLP | Oryza sativa | qtl_marker |
To | C316 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000180) | He-Y-Q et al., 1999 (IAGP) |
Plant Structure | (PO:0009051) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | He-Y-Q et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 5,729,669 | 12,023,770 | ~160K SNPs x 20 accessions (McNally 2... | 2,800 | Search for SNPs |
chr3 | 5,729,669 | 12,023,770 | '1536 chip' - 1311 SNPs x 395 rice ac... | 23 | Search for SNPs |
chr3 | 5,729,669 | 12,023,770 | Huang X, et al, Nat Genetics 2010 Nov... | 12,334 | Search for SNPs |
chr3 | 5,729,669 | 12,023,770 | RiceDiversity 44K SNP assay, 34 trait... | 12,334 | Search for SNPs |
chr3 | 5,729,669 | 12,023,770 | RiceDiversity 44K SNP assay, 34 trait... | 700 | Search for SNPs |