Oryza sativa QTL "AQBW004" (photoperiod sensitive genic male sterility)

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QTL Accession ID	AQBW004
Species	Oryza sativa (Rice) [ GR_tax:013681 ]
Trait Symbol	PPDSNGMS
Trait Name	photoperiod sensitive genic male sterility
Published Symbol	pms1
Trait Synonym(s)	PGMS genic-photoperiod sensitive male sterility
Trait Category	Sterility or fertility
Chromosome	7
Comments	Pollen fertility (a percentage of dark-staining pollens with iodine) was measured to evaluate photoperiod-sensitive genic male sterility in rice and used for QTL analysis. The QTL was detected in both F2 populations from the crosses of 58S/1514 and 58S/Lunhui422. The interaction of this QTL with the QTL on chromosome 12, pms3, was significant.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

BNL6.32

6,779,215-6,779,821 bp

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Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

BNL6.32

0-0 cM

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQBW004	7	0	0

Associated Markers (2)

Direction	Name	Type	Species	Assoc. Type
To	PMS1	Gene	Oryza sativa	ISS
To	RG477	RFLP	Oryza sativa	qtl_marker

Associated Genes (1)

Species	Accession	Name	Evidence
Oryza sativa	GR:0060678	PHOTOPERIOD SENSITIVE GENIC MALE STERILITY 1	Mei-M-H et al., 1999 (IAGP)

Associated Ontologies (7)

Term Type	Term	Evidence
Trait Ontology	(TO:0000009)	Mei-M-H et al., 1999 (IAGP)
Plant Structure	(PO:0009046)	Gramene curators, 2007 (IC)
	(PO:0009066)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007016)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007151)	Gramene curators, 2007 (IC)
Environment	(EO:0007078)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Mei-M-H et al., 1999 (SM)

Database Cross-References (1)

Gramene Literature	Mei-M-H, Dai-X-K, Xu-C-G, Zhang-Q, "Mapping and genetic analysis of the genes for photoperiod-sensitive genic male sterility in rice using the original mutant Nongken 58S", Crop Science, 1999, vol. 39, pp. 1711-1715

SNPs (1)

Chr	Start	Stop	Exp	Num. SNP Positions
chr7	6,779,215	6,779,821	~160K SNPs x 20 accessions (McNally 2...	1	Search for SNPs
chr7	6,779,215	6,779,821	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr7	6,779,215	6,779,821	Huang X, et al, Nat Genetics 2010 Nov...	0
chr7	6,779,215	6,779,821	RiceDiversity 44K SNP assay, 34 trait...	0
chr7	6,779,215	6,779,821	RiceDiversity 44K SNP assay, 34 trait...	0