QTL Accession ID | AQBN003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | AMYCN | ||||
Trait Name | amylose content | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 6 | ||||
Comments | The QTL was detected using amylose content data of the F2:3 population, but the map position was displayed on the map based on RI population. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 30,822,714-30,823,968 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 196-196 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQBN003 | 6 | 196 | 196 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G342 | RFLP | Oryza sativa | qtl_marker |
To | RG653 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000196) | Tan-Y-F et al., 1999 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tan-Y-F et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 30,822,714 | 30,823,968 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr6 | 30,822,714 | 30,823,968 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 30,822,714 | 30,823,968 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
chr6 | 30,822,714 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
chr6 | 30,822,714 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 0 |