QTL Accession ID | AQBG012 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | WBPHRS |
Trait Name | white-backed planthopper resistance |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biotic stress |
Chromosome | 6 |
Comments | Egg mortality (EM) from experiment A (1994) was measured to evaluate ovicidal response of rice to whitebacked planthopper and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 28,638,436-30,823,968 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 6 | 84.4-92.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBG012 | 6 | 84.4 | 92.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C962 | RFLP | Oryza sativa | qtl_marker |
To | G342 | RFLP | Oryza sativa | qtl_marker |
To | XNpb170 | RFLP | Oryza sativa | qtl_marker |
To | XNpb135 | RFLP | Oryza sativa | qtl_marker |
To | C607 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000205) | Tsunematsu-H et al., 1999 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007252) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tsunematsu-H et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 28,638,436 | 30,823,968 | ~160K SNPs x 20 accessions (McNally 2... | 629 | Search for SNPs |
chr6 | 28,638,436 | 30,823,968 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr6 | 28,638,436 | 30,823,968 | Huang X, et al, Nat Genetics 2010 Nov... | 6,183 | Search for SNPs |
chr6 | 28,638,436 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 6,183 | Search for SNPs |
chr6 | 28,638,436 | 30,823,968 | RiceDiversity 44K SNP assay, 34 trait... | 204 | Search for SNPs |