QTL Accession ID | AQBG002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | WBPHRS |
Trait Name | white-backed planthopper resistance |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Biotic stress |
Chromosome | 6 |
Comments | Percentage of watery lesions (PWL) from experiment B (1995) was measured to evaluate ovicidal response of rice to whitebacked planthopper and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 13,684,438-17,839,762 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 6 | 46.6-46.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQBG002 | 6 | 46.6 | 46.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | XNpb233 | RFLP | Oryza sativa | qtl_marker |
To | C282 | RFLP | Oryza sativa | qtl_marker |
To | C991 | RFLP | Oryza sativa | qtl_marker |
To | R688 | RFLP | Oryza sativa | qtl_marker |
To | C574 | RFLP | Oryza sativa | qtl_marker |
To | R1985 | RFLP | Oryza sativa | qtl_marker |
To | XNpb172 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000205) | Tsunematsu-H et al., 1999 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007252) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tsunematsu-H et al., 1999 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 13,684,438 | 17,839,762 | ~160K SNPs x 20 accessions (McNally 2... | 1,732 | Search for SNPs |
chr6 | 13,684,438 | 17,839,762 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr6 | 13,684,438 | 17,839,762 | Huang X, et al, Nat Genetics 2010 Nov... | 10,157 | Search for SNPs |
chr6 | 13,684,438 | 17,839,762 | RiceDiversity 44K SNP assay, 34 trait... | 10,157 | Search for SNPs |
chr6 | 13,684,438 | 17,839,762 | RiceDiversity 44K SNP assay, 34 trait... | 363 | Search for SNPs |