QTL Accession ID | AQAP023 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | BPHRS |
Trait Name | brown planthopper resistance |
Published Symbol | |
Trait Synonym(s) | BPH |
Trait Category | Biotic stress |
Chromosome | 5 |
Comments | The resistance index (RI) from the bulk test was used for resistance evaluation and QTL analysis. This locus were found interacting with another locus, AQAP024. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 18,874,932-22,580,355 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 5 | 122.6-167.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAP023 | 5 | 122.6 | 167.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG13 | RFLP | Oryza sativa | qtl_marker |
To | RM163 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM161 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | CDSR049 | RFLP | Saccharum officinarum | qtl_marker |
To | RM249 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG346 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000424) | Xu-X-F et al., 2002 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007317) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Xu-X-F et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 18,874,932 | 22,580,355 | ~160K SNPs x 20 accessions (McNally 2... | 2,273 | Search for SNPs |
chr5 | 18,874,932 | 22,580,355 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr5 | 18,874,932 | 22,580,355 | Huang X, et al, Nat Genetics 2010 Nov... | 6,580 | Search for SNPs |
chr5 | 18,874,932 | 22,580,355 | RiceDiversity 44K SNP assay, 34 trait... | 6,580 | Search for SNPs |
chr5 | 18,874,932 | 22,580,355 | RiceDiversity 44K SNP assay, 34 trait... | 395 | Search for SNPs |