QTL Accession ID | AQAM033 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RHZINLG |
Trait Name | rhizome internode length |
Published Symbol | QRn10 |
Trait Synonym(s) | average rhizome internode length |
Trait Category | Anatomy |
Chromosome | 10 |
Comments | Average rhizome internode length was measured and used to evaluate the rhizomatousness which is related to perenniality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 5,352,766-22,243,349 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 10 | 23.1-31.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAM033 | 10 | 23.1 | 31.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM271 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM269 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM216 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM228 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000554) | Hu-F-Y et al., 2003 (IAGP) |
Plant Structure | (PO:0004542) | Hu-F-Y et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007016) | Hu-F-Y et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007151) | Hu-F-Y et al., 2003 (SM) |
(GRO:0007139) | Gramene curators, 2007 (IC) | |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hu-F-Y et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 5,352,766 | 22,243,349 | ~160K SNPs x 20 accessions (McNally 2... | 5,292 | Search for SNPs |
chr10 | 5,352,766 | 22,243,349 | '1536 chip' - 1311 SNPs x 395 rice ac... | 59 | Search for SNPs |
chr10 | 5,352,766 | 22,243,349 | Huang X, et al, Nat Genetics 2010 Nov... | 29,735 | Search for SNPs |
chr10 | 5,352,766 | 22,243,349 | RiceDiversity 44K SNP assay, 34 trait... | 29,735 | Search for SNPs |
chr10 | 5,352,766 | 22,243,349 | RiceDiversity 44K SNP assay, 34 trait... | 1,290 | Search for SNPs |