QTL Accession ID | AQAM028 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RHZBRAG |
Trait Name | rhizome branching angle |
Published Symbol | QRl7 |
Trait Synonym(s) | rhizome branching degree |
Trait Category | Anatomy |
Chromosome | 7 |
Comments | Rhizome branching degree was measured and used to evaluate the rhizomatousness which is related to perenniality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 21,871,205-25,472,820 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 7 | 46-60.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAM028 | 7 | 46 | 60.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM336 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM2826 | SSR | Oryza sativa | qtl_marker |
To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000550) | Hu-F-Y et al., 2003 (IAGP) |
Plant Structure | (PO:0004542) | Hu-F-Y et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007016) | Hu-F-Y et al., 2003 (SM) |
(PO:0007130) | Gramene curators, 2007 (IC) | |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007151) | Hu-F-Y et al., 2003 (SM) |
(GRO:0007139) | Gramene curators, 2007 (IC) | |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hu-F-Y et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 21,871,205 | 25,472,820 | ~160K SNPs x 20 accessions (McNally 2... | 1,161 | Search for SNPs |
chr7 | 21,871,205 | 25,472,820 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
chr7 | 21,871,205 | 25,472,820 | Huang X, et al, Nat Genetics 2010 Nov... | 8,443 | Search for SNPs |
chr7 | 21,871,205 | 25,472,820 | RiceDiversity 44K SNP assay, 34 trait... | 8,443 | Search for SNPs |
chr7 | 21,871,205 | 25,472,820 | RiceDiversity 44K SNP assay, 34 trait... | 392 | Search for SNPs |