QTL Accession ID | AQAM005 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TINB | ||||||||||
Trait Name | tiller number | ||||||||||
Published Symbol | Rhz2 | ||||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||||
Chromosome | 3 | ||||||||||
Comments | Tiller number per plant was measured and used to evaluate the rhizomatousness which is related to perenniality. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 7,125,911-7,126,131 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 3 | 44-53.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAM005 | 3 | 44 | 53.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | OSR13 | SSR | Oryza sativa | qtl_marker |
To | OSR16 | SSR | Oryza sativa | qtl_marker |
To | RM5883 | SSR | Oryza sativa | qtl_marker |
To | RM36 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000346) | Hu-F-Y et al., 2003 (IAGP) |
Plant Structure | (PO:0005001) | Hu-F-Y et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007016) | Hu-F-Y et al., 2003 (SM) |
(PO:0007073) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007151) | Hu-F-Y et al., 2003 (SM) |
(GRO:0007049) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Hu-F-Y et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 7,125,911 | 7,126,131 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 7,125,911 | 7,126,131 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 7,125,911 | 7,126,131 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr3 | 7,125,911 | 7,126,131 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr3 | 7,125,911 | 7,126,131 | RiceDiversity 44K SNP assay, 34 trait... | 0 |