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Oryza sativa QTL "AQAM003" (rhizome branching angle)
| QTL Accession ID | AQAM003 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | RHZBRAG |
| Trait Name | rhizome branching angle |
| Published Symbol | Rhz2 |
| Trait Synonym(s) | rhizome branching degree |
| Trait Category | Anatomy |
| Chromosome | 3 |
| Comments | Rhizome branching degree was measured and used to evaluate the rhizomatousness which is related to perenniality. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 7,125,911-7,126,131 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 3 | 44-53.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQAM003 | 3 | 44 | 53.4 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | OSR13 | SSR | Oryza sativa | qtl_marker |
| To | OSR16 | SSR | Oryza sativa | qtl_marker |
| To | RM5883 | SSR | Oryza sativa | qtl_marker |
| To | RM36 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (10)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000550) | Hu-F-Y et al., 2003 (IAGP) |
| Plant Structure | (PO:0004542) | Hu-F-Y et al., 2003 (SM) |
| Plant Growth and Development Stage | (PO:0007016) | Hu-F-Y et al., 2003 (SM) |
| (PO:0007130) | Gramene curators, 2007 (IC) | |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007151) | Hu-F-Y et al., 2003 (SM) |
| (GRO:0007139) | Gramene curators, 2007 (IC) | |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hu-F-Y et al., 2003 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr3 | 7,125,911 | 7,126,131 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr3 | 7,125,911 | 7,126,131 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr3 | 7,125,911 | 7,126,131 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr3 | 7,125,911 | 7,126,131 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr3 | 7,125,911 | 7,126,131 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
