![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
Protein Home |
Advanced Search |
Search by Pfam or PROSITE |
Browse by GO Slim |
Documents |
Tutorial |
FAQ |
Help
Oryza sativa protein "Q40643" (Transcriptional activator) | Accession | Q40643 |
|---|---|
| Species | Oryza sativa [ GR_tax:013681 ] |
| Name | Transcriptional activator |
| Symbol | RA |
| Synonyms (1) | Ra |
| E.C. Numbers (0) | None |
| Gene Names (1) | RA (TRANSCRIPTIONAL ACTIVATOR A) |
| Organelle | Not available |
| Best Hits To TIGR Rice Gene Models (0) | None [ Click here to generate a BLASTP query ] |
| IRGSP/RAP Genes (1) | Os04g0557800 |
| Source | TREMBL |
| GenBank Accessions (1) | AAC49219 |
| UniProt Accession (Sequence) | Q40643 |
| Cultivar | PURPLE 522 ( GRIN , IRIS ) |
| Comment | One rice R gene. An active homologue with extensive homology with other R genes. Located at a position on chromosome 4 previously shown to be in synteny with regions of maize chromosomes 2 and 10 that contain the B and R loci, respectively. Ra gene can activate the anthocyanin pathway. (Imported from Gene GR:0060719) |
Associated Ontologies (9) | Term Type | Term | Reference | Evidence |
|---|---|---|---|
| Biological Process | flavonoid metabolic process (GO:0009812) | Jaiswal-P et al., 2006 | IC |
| Plant Structure | seed coat (PO:0009088) | Jaiswal-P et al., 2006 | IC |
| endosperm (PO:0009089) | Jaiswal-P et al., 2006 | IC | |
| Plant Growth and Development Stage | whole plant fruit formation stage (PO:0007042) | Jaiswal-P et al., 2006 | IC |
| inflorescence emergence stage (PO:0007041) | Jaiswal-P et al., 2006 | IC | |
| whole plant fruit ripening complete stage (PO:0007038) | Jaiswal-P et al., 2006 | IC | |
| whole plant fruit ripening stage (PO:0007010) | Jaiswal-P et al., 2006 | IC | |
| Trait | endosperm color (TO:0000487) | Jaiswal-P et al., 2006 | IC |
| seed coat color (TO:0000190) | Jaiswal-P et al., 2006 | IC |
Keywords (0)
Similarity to Other Proteins (22) | Viridiplantae Green plants -Embryophytes (plants) -Magnoliophytes (flowering plants) -Monocots | Grasses | Rice | Maize | Sorghum | Wheat | Barley | Rye | Oat | Sugarcane -Dicots | Brassicaceae | Arabidopsis | Fabaceae (Legumes) | Solanaceae | Cucurbitaceae |
| Others : Fungi | Metazoa |
| 3D protein structures : BLink from NCBI |
Protein Features (7) | Pfam (Info) | PF00010; HLH | All Members of this Family | |
|---|---|---|---|
| Prosite (Info) | PS00017; ATP_GTP_A | Residues from 122: GQGLPGKS All Members of this Family |
|
| PS00038; HELIX_LOOP_HELIX | Residues from 429: DKASILAETIAYLKEL All Members of this Family |
||
| PS50888; HLH_2 | Sequence info. not available All Members of this Family |
||
| Physio-chemical features | Q40643 | ||
| ProtoMap (Info) | Q40643_ORYSA | ||
| Feature Type | Residues (From - To) | Evidence | |
| Signal peptide | 1 - 64 | Jaiswal-P et al., 2002 | |
Database Cross-References (3) 
