ID | 86264 | ||||||||||
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Name | flo4 (GENE SYMBOL) | ||||||||||
Synonyms (9) |
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GRAMENE GENE | GR:0101188 | ||||||||||
Type | Gene | ||||||||||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||||||
Germplasm | |||||||||||
Description | Pyruvate orthophosphate dikinase (PPDK; EC 2.7.9.1) catalyzes the interconversion of pyruvate, ATP, and Pi (inorganic Phosphate) with phosphoenolpyruvate (PEP), AMP, and PPi. This enzyme plays an important role in the photosynthesis of C4 and crassulacean acid metabolism (CAM) plants, where it catalyzes the conversion of pyruvate to PEP. Although PPDK is also present in C3 plants such as rice, it is not thought to participate directly in photosynthesis. Nevertheless, the PPDK found in C3 plants is highly homologous to the C4 enzyme with regard to its structure and biochemical characteristics. The mutant form results in white-core opaque phenotype. The gene flo4, cosegregates with insertional mutations in the OsPPDKB rice gene. flo4 is an important modulator of carbon flow for starch and lipid biosynthesis during grain filling. There are two promoters for this gene. One gives a long form of the transcript (3.4kb) that encodes for the PPDK protein targeted to the plastid. Another promoter found in the second intron of the larger 3.4kb transcript region of the gene, gives a shorter form of the transcript (3.0kb) and the translated PPDK protein is targeted to cytoplasm, because the translational start site of the smaller 3.0kb form is present downsteram of the plastid targeting peptide found in the long form. The plastid form is expressed in the leaf blade and sheath, wheras the cytosolic form was detected in root, leaf blade, leaf sheath and developing grains and was not expressed in carpels. The cytosolic form was induced after pollination and gradually increased during fruit (grain) development. |
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Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | GR:0101188 |
Chromosome | 5 |
Has Phenotype | yes |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 19,655,990-19,675,341 bp | View Comparative Map | |||
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Term Type | Term Name | Term Accession | |
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Molecular Function | ATP binding | GO:0005524 | Search |
Cellular Component | cytosol | GO:0005829 | Search |
Biological Process | lipid biosynthetic process | GO:0008610 | Search |
Biological Process | response to light stimulus | GO:0009416 | Search |
Cellular Component | plastid | GO:0009536 | Search |
Molecular Function | kinase activity | GO:0016301 | Search |
Biological Process | phosphorylation | GO:0016310 | Search |
Molecular Function | transferase activity, transferring phosphorus-containing groups | GO:0016772 | Search |
Biological Process | starch biosynthetic process | GO:0019252 | Search |
Molecular Function | pyruvate, phosphate dikinase activity | GO:0050242 | Search |
Cereal Plant Growth Stage | 08-dough stage | GRO:0007042 | Search |
Cereal Plant Growth Stage | 09-mature grain stage | GRO:0007045 | Search |
Cereal Plant Growth Stage | embryo stage EM6 | GRO:0007172 | Search |
Cereal Plant Growth Stage | embryo stage EM7 | GRO:0007174 | Search |
Cereal Plant Growth Stage | embryo stage EM8 | GRO:0007175 | Search |
Plant Structure | aleurone layer | PO:0005360 | Search |
Plant Structure | root | PO:0009005 | Search |
Plant Structure | endosperm | PO:0009089 | Search |
Plant Structure | leaf lamina | PO:0020039 | Search |
Plant Structure | leaf sheath | PO:0020104 | Search |
Plant Structure | scutellum | PO:0020110 | Search |
Trait | light sensitivity | TO:0000075 | Search |
Trait | floury endosperm | TO:0000104 | Search |