ID | 17579 | ||
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Name | RZ538 | ||
Synonyms (2) |
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Deprecated Gramene Marker Acc | 48584431 | ||
MAIZEGDB PROBE | p-rz538 | ||
Type | RFLP | ||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||
Germplasm | |||
Description | |||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RZ538 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | seedling leaf |
Source Treatment | etiolated |
Vector | pBluescript SK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0.9 |
Vector Excision Enzyme | EcoRI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 37,776,663-37,776,808 bp | View Comparative Map | |||
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BNL6.32 | Chr. 1 | 37,777,152-37,777,336 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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QTL | CNRRI XeiB/Mil46 RI QTL 2002 | BNL6.32 | 1 | 178-178 cM | View Comparative Map | |||
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CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 1 | 174.9-174.9 cM | View Comparative Map | ||||
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TTU IR64/Orufi RI QTL 2003 | BNL6.32 | 1a | 4.1-4.1 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Mace 2009 | BNL6.32 | 3 | 138.8-138.8 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | BNL 1996 | BNL6.32 | 3 | 112.3-112.3 cM | View Comparative Map | |||
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Cornell Wilson 1999 | BNL6.32 | 3 | 82-82 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 164.4-164.4 cM | View Comparative Map | |||||
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IBM 2002 | BNL6.32 | 3 | 358.3-358.3 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 421.3-421.3 cM | View Comparative Map | |||||
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UMC 1998 | BNL6.32 | 3 | 92.2-92.2 cM | View Comparative Map | ||||
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BNL6.32 | 8 | 129.5-129.5 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 1 | 142.5-142.5 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 1 | 97.3-97.3 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQAK002 | qtl_marker |
Oryza sativa | QTL | AQAK009 | qtl_marker |
Oryza sativa | QTL | AQAK022 | qtl_marker |
Oryza sativa | QTL | AQCF025 | qtl_marker |
Oryza sativa | QTL | AQCF026 | qtl_marker |
Oryza sativa | QTL | AQEJ025 | qtl_marker |
Oryza sativa | QTL | AQEJ027 | qtl_marker |
Oryza sativa | QTL | AQEJ029 | qtl_marker |
Oryza sativa | QTL | AQEJ031 | qtl_marker |
Oryza sativa | QTL | AQEJ033 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 3.06 | bin_marker |
Zea mays subsp. mays | Maize Bin | Bin 8.07 | bin_marker |
Oryza sativa | Probed Site | rz538a | maizegdb_to_gramene |
Oryza sativa | Probed Site | rz538b | maizegdb_to_gramene |
Oryza sativa Indica Group | EST | AA231793 | related_sequence |
Oryza sativa Indica Group | EST | AA231794 | related_sequence |
Oryza sativa Indica Group | EST | AA231793 | contained_in_sequence |
Oryza sativa Indica Group | EST | AA231794 | contained_in_sequence |
RZ538 SL Autorad: Survey blot of the probe RZ538 for the BS125/2/BS125/WLO2 population |