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Oryza sativa RFLP "RZ474"
| ID | 16805 | ||||||
|---|---|---|---|---|---|---|---|
| Name | RZ474 | ||||||
| Synonyms (5) |
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| Deprecated Gramene Marker Acc | 48583255 | ||||||
| MAIZEGDB PROBE | p-rz474 | ||||||
| Type | RFLP | ||||||
| Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||||||
| Germplasm | |||||||
| Description | |||||||
| Tags () | None |
Source/Library
Details
| Marker Created: | |
|---|---|
| Marker Updated: | |
| Internal Marker Accession: | RZ474 |
| DNA Treatment | |
| Source Type | cDNA |
| Source Tissue | seedling leaf |
| Source Treatment | etiolated |
| Vector | pBluescript SK |
| Vector Antibiotic Resistance | Ampicillin |
| Fragment Size | 0.8 |
| Vector Excision Enzyme | EcoRI |
| Vector Primers | M13 forward/M13 reverse |
| Overgo1 | SOG0128 |
| Overgo2 |
Database Cross-References (3)
| Gramene Literature | Causse-M-A, Fulton-T-M, Cho-Y-G, Ahn-S-N, Chunwongse-J, Wu-K, Xiao-J, Yu-Z, Ronald-P-C, Harrington-S-E, Second-G, McCouch-S-R, Tanksley-S-D, "Saturated molecular map of the rice genome based on an interspecific backcross population", Genetics, 1994, vol. 138, pp. 1251-1274 |
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| Gramene Diversity Rice Marker | 370 |
| Gramene Diversity Rice Marker | 506 |
Sequences (4)
Related Sequences (4)
Align All Sequences
Map Positions (28)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 25,128,239-25,128,576 bp | View Comparative Map | |||
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| BNL6.32 | Chr. 3 | 25,128,558-25,128,864 bp | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | KRGRP 1998 | BNL6.32 | 3 | 134.3-134.3 cM | View Comparative Map | |||
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| TTU CTIR 2000 | BNL6.32 | 3 | 120.1-120.1 cM | View Comparative Map | ||||
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| QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 3 | 141.9-141.9 cM | View Comparative Map | |||
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| CNHZAU Pei/8902 QTL 1999 | BNL6.32 | 3 | 56.1-56.1 cM | View Comparative Map | ||||
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| Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 3 | 125.9-125.9 cM | View Comparative Map | ||||
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| Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 3 | 103.8-103.8 cM | View Comparative Map | ||||
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| Cornell V20A/Oruf QTL 1998 | BNL6.32 | 3 | 61.5-61.5 cM | View Comparative Map | ||||
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| CTIR CT9993/IR6226 QTL 2000 | BNL6.32 | 3 | 120.1-120.1 cM | View Comparative Map | ||||
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| IGCAS Jas85/Lem F2 QTL 2000 | BNL6.32 | 3 | 131.4-131.4 cM | View Comparative Map | ||||
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| IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 190.5-190.5 cM | View Comparative Map | ||||
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| KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 3 | 134.3-134.3 cM | View Comparative Map | ||||
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| MU CT9993/IR6226 QTL 2004 | BNL6.32 | 3 | 177-177 cM | View Comparative Map | ||||
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| TNCGEB CT9993/IR6226 QTL 2004 | BNL6.32 | 3 | 78.4-78.4 cM | View Comparative Map | ||||
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| UKUW Bala/Azu QTL 1997 | BNL6.32 | 3 | 145.7-145.7 cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | JIC 81B/ICMP 2004 | BNL6.32 | 2 | 37.3-37.3 cM | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Klein 2004 | BNL6.32 | LG-01 | 40.7-40.7 cM | View Comparative Map | |||
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| Paterson 2003 | BNL6.32 | C | 30-30 cM | View Comparative Map | ||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | IBM 2002 | BNL6.32 | 1 | 721.7-721.7 cM | View Comparative Map | |||
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| BNL6.32 | 2 | 396.4-396.4 cM | View Comparative Map | |||||
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| BNL6.32 | 5 | 177.1-177.1 cM | View Comparative Map | |||||
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| SSR IBM 2001 | BNL6.32 | 1 | 530.3-530.3 cM | View Comparative Map | ||||
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| BNL6.32 | 5 | 164.1-164.1 cM | View Comparative Map | |||||
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| UMC 1998 | BNL6.32 | 1 | 181.6-181.6 cM | View Comparative Map | ||||
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| BNL6.32 | 5 | 56-56 cM | View Comparative Map | |||||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Genetic | Cornell RFLP 1994 | BNL6.32 | 3 | 79-79 cM | View Comparative Map | |||
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| Cornell RFLP 2001 | BNL6.32 | 3 | 71.3-71.3 cM | View Comparative Map | ||||
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Associations (73)
Associated Ontologies (0)
Images (1)
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RZ474 SL Autorad: Survey blot of the probe RZ474 for the BS125/2/BS125/WLO2 population |
