ID | 11212 | ||
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Name | RM135 | ||
Synonyms (2) |
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Type | SSR | ||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||
Germplasm | |||
Description | |||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM135 |
Repeat Motif | (CGG)10 |
Anneal Temperature | 61 |
Expected PCR Product Size | 131 |
Sequence Source | |
Linkage Group | |
Remarks |
Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
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Gramene Diversity Rice Marker | 176 |
ACTCTNACTCTGTCTCCTCCCCCGCGTCGGTCGCTTCGCTTCTACTGGAGGAGAGCAGAGGTGGTGGTTGGTGAGANAGG
ATGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGCCGGCCAGAAGCTGAAGAGCATGGACGTCGACAAGCT
GGAGAACGGCGGCGACAAGCCGCCCTCAAGTACCACGGCTGGAGGGCCATGCCCTTCATCATAGGGAACGAGACGTTCGA
GAAGCTGGGGACGCTGGGGACGTCGGCGAACCTGCTGGTGTACCTGACGCAGGTGTTNCACATTCGGANGTTGGACGGGC
GACGTTCTTAACGGCCTTAACGGAACA
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 27,411,671-27,411,781 bp | View Comparative Map | |||
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BNL6.32 | Chr. 3 | 27,411,681-27,411,811 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 3 | 157.3-157.3 cM | View Comparative Map | |||
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IRMI 2003 | BNL6.32 | 3 | 120.4-120.4 cM | View Comparative Map | ||||
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QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 3 | 111.8-111.8 cM | View Comparative Map | |||
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CNHZAU Zhe97/Wuy2 QTL 2004 | BNL6.32 | 3 | 153.6-153.6 cM | View Comparative Map | ||||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 3 | 134.5-134.5 cM | View Comparative Map | ||||
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CNWHU B5/Min63 QTL 2004 | BNL6.32 | 3 | 56.1-56.1 cM | View Comparative Map | ||||
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CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 3a | 22.5-22.5 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 3 | 157.3-157.3 cM | View Comparative Map | ||||
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IRRI IR622/IR600 QTL 2003 | BNL6.32 | 3 | 152.5-152.5 cM | View Comparative Map | ||||
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IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 3 | 223.1-223.1 cM | View Comparative Map | ||||
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IRRI RD23/Olong F2 QTL 2003 | BNL6.32 | 3 | 145.8-145.8 cM | View Comparative Map | ||||
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NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 8 | 82.5-82.5 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 2001 | BNL6.32 | 3 | 80.6-80.6 cM | View Comparative Map | |||
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