View Marker "RM135"

Title	Design	Polymorphism Type	Allele Scoring Protocol	PI(s)	Comments	Data
Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers	38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers	SSR	PCR products were size separated using ABI 377 DNA analyzer; SSR fragements sizes were estimated with GenScan software. Alleles were called manually using PCR products of IR36 as a standard.	Mackill-D-J	Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002.	Show Allele Data
The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elavated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation	198 O. glaberrima and 9 O. sativa accessions were evaluated using 93 SSR markers.	SSR	PCR products were size separated using polyacrylamine gel electrophoresis and detected using silver staining or using an ABI fluorescent detection system. Alleles were scored using Genotyper software.	McCouch-S-R	Reference: Semon et al., 2005.	Show Allele Data
Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers	52 basmati and aromatic/quality and 17 indica and japonica rice varieties/accessions were genotyped using 30 SSR markers.	SSR	Fragment sizes were estimated with GENSCAN 672 software by the Local Southern method. Allele calling was done using GENOTYPER software. The population structure displayed is based on UPGMA clustering analysis.	McCouch-S-R	Reference: Jain et al., 2004.	Show Allele Data

Title

Design

Polymorphism Type

Allele Scoring Protocol

PI(s)

Comments

Data

Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers

38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers

SSR

PCR products were size separated using ABI 377 DNA analyzer; SSR fragements sizes were estimated with GenScan software. Alleles were called manually using PCR products of IR36 as a standard.

Mackill-D-J

Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002.

Show Allele Data

The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elavated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation

198 O. glaberrima and 9 O. sativa accessions were evaluated using 93 SSR markers.

SSR

PCR products were size separated using polyacrylamine gel electrophoresis and detected using silver staining or using an ABI fluorescent detection system. Alleles were scored using Genotyper software.

McCouch-S-R

Reference: Semon et al., 2005.

Show Allele Data

Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers

52 basmati and aromatic/quality and 17 indica and japonica rice varieties/accessions were genotyped using 30 SSR markers.

SSR

Fragment sizes were estimated with GENSCAN 672 software by the Local Southern method. Allele calling was done using GENOTYPER software. The population structure displayed is based on UPGMA clustering analysis.

McCouch-S-R

Reference: Jain et al., 2004.

Show Allele Data