Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Accession | GR:0101322 | ||||||||||||
Gene Symbol | APL4 | ||||||||||||
Gene Name | ADP-glucose Pyrophosphorylase large subunit 4 | ||||||||||||
Synonyms (11) |
|
||||||||||||
E.C. Numbers (1) | 2.7.7.27 | ||||||||||||
Pathway Reactions (1) | Glucose-1-phosphate adenylyltransferase | ||||||||||||
Chromosome No. | 7 | ||||||||||||
Gene Type | CDS (Protein coding) | ||||||||||||
Has Phenotype | no | ||||||||||||
Description | This gene encodes for the large subunit of enzyme ADP-glucose pyrophosphorylase (AGP). The enzyme regulates starch biosynthesis and catalyzes the reaction ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 7,981,506-7,988,288bp | View Comparative Map | |||
|
Map Position [ View in Marker DB ] | |||||
---|---|---|---|---|---|
# | Map Set Name | Linkage Group | Start Position | Stop Position | CMap Feature Acc |
1 | Rice japonica MSU6 | Chr. 7 | 7981506 bp | 7988288 bp | grjp2009a-7-GR:0101322 |
Plant Structure | endosperm (PO:0009089) |
Cellular Component | plastid (GO:0009536) |
Molecular Function | glucose-1-phosphate adenylyltransferase activity (GO:0008878), nucleotidyltransferase activity (GO:0016779) |
Biological Process | biosynthetic process (GO:0009058), starch biosynthetic process (GO:0019252) |
Environment | cold temperature regimen (EO:0007174), watering regimen (EO:0007383), unknown environment (EO:0007403) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 7,981,506 | 7,988,288 | ~160K SNPs x 20 accessions (McNally 2... | 4 | Search for SNPs |
chr7 | 7,981,506 | 7,988,288 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 7,981,506 | 7,988,288 | Huang X, et al, Nat Genetics 2010 Nov... | 28 | Search for SNPs |
chr7 | 7,981,506 | 7,988,288 | RiceDiversity 44K SNP assay, 34 trait... | 28 | Search for SNPs |
chr7 | 7,981,506 | 7,988,288 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |